STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_10338-1Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)    
Predicted Functional Partners:
RvY_03175-1
Uncharacterized protein.
    
 0.999
RvY_10773-1
Uncharacterized protein.
    
 0.999
RvY_14321-1
WD_REPEATS_REGION domain-containing protein.
    
 0.999
RvY_17785-1
Uncharacterized protein.
    
 0.999
RvY_18956-1
Uncharacterized protein.
    
 0.998
RvY_00629-1
Nop domain-containing protein.
    
 0.996
RvY_10446-1
Uncharacterized protein.
    
 0.993
RvY_13697-1
Small nuclear ribonucleoprotein Sm D3.
   
  0.993
RvY_15345-1
Small nuclear ribonucleoprotein G.
   
 0.993
RvY_13981-1
Sm domain-containing protein; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
  0.991
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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