STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_08940-1Uncharacterized protein. (136 aa)    
Predicted Functional Partners:
RvY_18256
Uncharacterized protein.
   
 
  0.979
RvY_18256-2
Protein kinase domain-containing protein.
   
 
  0.979
RvY_03208-1
Uncharacterized protein.
   
 0.969
RvY_07068
Uncharacterized protein.
   
 
 0.861
RvY_07068-2
Uncharacterized protein.
   
 
 0.861
RvY_09208-1
V-SNARE coiled-coil homology domain-containing protein.
     
 0.791
RvY_15818-1
Clat_adaptor_s domain-containing protein.
    
 0.789
RvY_09665-1
Sorting nexin; Involved in several stages of intracellular trafficking.
   
 
 0.784
RvY_09649-1
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.
    
 0.783
RvY_13033-1
AP-1 complex subunit gamma.
    
 0.772
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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