RvY_09968-1 protein (Ramazzottius varieornatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RvY_09968-1

START domain-containing protein. (210 aa)

Predicted Functional Partners:

RvY_02940-1

0.881

RvY_18260-1

0.881

RvY_13921-1

0.767

RvY_09002-1

0.618

RvY_14246-1

0.618

RvY_07375-1

0.605

RvY_15392-1

0.605

RvY_17970-1

0.603

RvY_07630-1

0.555

RvY_17595-1

0.555

Your Current Organism:

Ramazzottius varieornatus

NCBI taxonomy Id: 947166
Other names: R. varieornatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RvY_02940-1	RvY_09968-1	A0A1D1ULD7	A0A1D1VDK9	MSP domain-containing protein.	START domain-containing protein.	0.881
RvY_02940-1	RvY_17595-1	A0A1D1ULD7	A0A1D1W2Q1	MSP domain-containing protein.	Uncharacterized protein.	0.677
RvY_07375-1	RvY_09002-1	A0A1D1VBF1	A0A1D1VFT7	2Fe-2S ferredoxin-type domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.754
RvY_07375-1	RvY_09968-1	A0A1D1VBF1	A0A1D1VDK9	2Fe-2S ferredoxin-type domain-containing protein.	START domain-containing protein.	0.605
RvY_07375-1	RvY_14246-1	A0A1D1VBF1	A0A1D1VQL8	2Fe-2S ferredoxin-type domain-containing protein.	Uncharacterized protein.	0.754
RvY_07375-1	RvY_17970-1	A0A1D1VBF1	A0A1D1W4R0	2Fe-2S ferredoxin-type domain-containing protein.	NADPH:adrenodoxin oxidoreductase, mitochondrial.	0.993
RvY_07630-1	RvY_09968-1	A0A1D1V7V9	A0A1D1VDK9	START domain-containing protein.	START domain-containing protein.	0.555
RvY_07630-1	RvY_17595-1	A0A1D1V7V9	A0A1D1W2Q1	START domain-containing protein.	Uncharacterized protein.	0.555
RvY_09002-1	RvY_07375-1	A0A1D1VFT7	A0A1D1VBF1	Uncharacterized protein; Belongs to the cytochrome P450 family.	2Fe-2S ferredoxin-type domain-containing protein.	0.754
RvY_09002-1	RvY_09968-1	A0A1D1VFT7	A0A1D1VDK9	Uncharacterized protein; Belongs to the cytochrome P450 family.	START domain-containing protein.	0.618
RvY_09002-1	RvY_15392-1	A0A1D1VFT7	A0A1D1VWC5	Uncharacterized protein; Belongs to the cytochrome P450 family.	2Fe-2S ferredoxin-type domain-containing protein.	0.754
RvY_09002-1	RvY_17970-1	A0A1D1VFT7	A0A1D1W4R0	Uncharacterized protein; Belongs to the cytochrome P450 family.	NADPH:adrenodoxin oxidoreductase, mitochondrial.	0.741
RvY_09968-1	RvY_02940-1	A0A1D1VDK9	A0A1D1ULD7	START domain-containing protein.	MSP domain-containing protein.	0.881
RvY_09968-1	RvY_07375-1	A0A1D1VDK9	A0A1D1VBF1	START domain-containing protein.	2Fe-2S ferredoxin-type domain-containing protein.	0.605
RvY_09968-1	RvY_07630-1	A0A1D1VDK9	A0A1D1V7V9	START domain-containing protein.	START domain-containing protein.	0.555
RvY_09968-1	RvY_09002-1	A0A1D1VDK9	A0A1D1VFT7	START domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.618
RvY_09968-1	RvY_13921-1	A0A1D1VDK9	A0A1D1VPJ9	START domain-containing protein.	Uncharacterized protein.	0.767
RvY_09968-1	RvY_14246-1	A0A1D1VDK9	A0A1D1VQL8	START domain-containing protein.	Uncharacterized protein.	0.618
RvY_09968-1	RvY_15392-1	A0A1D1VDK9	A0A1D1VWC5	START domain-containing protein.	2Fe-2S ferredoxin-type domain-containing protein.	0.605
RvY_09968-1	RvY_17595-1	A0A1D1VDK9	A0A1D1W2Q1	START domain-containing protein.	Uncharacterized protein.	0.555