STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_10726-1Uncharacterized protein. (298 aa)    
Predicted Functional Partners:
RvY_09114-1
Uncharacterized protein.
   
 0.985
RvY_15848-1
Uncharacterized protein.
   
 0.960
RvY_14395-1
TAF domain-containing protein.
   
 0.954
RvY_00292-1
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
   
 0.952
RvY_05450-1
TFIIB-type domain-containing protein.
   
 0.914
RvY_05193-1
TFIIB-type domain-containing protein.
   
 0.914
RvY_12661-1
TAFII28 domain-containing protein.
   
 0.901
RvY_00630-1
HTH TFE/IIEalpha-type domain-containing protein.
   
 0.899
RvY_07580-1
TFIID_20kDa domain-containing protein.
    
 0.899
RvY_07848-1
TAFH domain-containing protein.
    
 0.899
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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