STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_10706-1Uncharacterized protein. (1029 aa)    
Predicted Functional Partners:
RvY_09491-1
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.839
RvY_02448-1
HECT domain-containing protein.
     
 0.710
RvY_17065-1
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
    
 
 0.693
RvY_00579-1
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
    
   0.638
RvY_08525-1
Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.
    
   0.638
RvY_09844-1
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
    
   0.638
RvY_10069-1
Uncharacterized protein.
    
   0.638
RvY_15407-1
Ribosomal_L23eN domain-containing protein.
    
 
 0.638
RvY_19359-1
Uncharacterized protein.
    
   0.634
RvY_16589-1
Ribosomal_S10 domain-containing protein.
    
   0.618
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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