STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_14303-1RBR-type E3 ubiquitin transferase. (516 aa)    
Predicted Functional Partners:
RvY_18443
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.895
RvY_17825
RING-type domain-containing protein.
    
 0.872
RvY_00564-1
Ubiquitin-like domain-containing protein.
    
 0.867
RvY_11091-1
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
 
      0.867
RvY_15419-1
Ubiquitin-like domain-containing protein.
    
 0.867
RvY_04966-1
Ubiquitin-like domain-containing protein.
    
  0.844
RvY_01640-1
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.819
RvY_10804-1
RBR-type E3 ubiquitin transferase.
  
 
0.809
RvY_00201-1
Uncharacterized protein.
   
 
 0.769
RvY_01883-1
Uncharacterized protein.
    
 0.746
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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