STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_13987-1Uncharacterized protein. (695 aa)    
Predicted Functional Partners:
RvY_10514-1
Sas10 domain-containing protein.
   
   0.979
RvY_15502-1
Uncharacterized protein.
   
 
 0.961
RvY_02236-1
Uncharacterized protein.
   
 
 0.946
RvY_07170-1
Nop domain-containing protein.
   
   0.945
RvY_05878-1
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
   0.930
RvY_17772-1
Brix domain-containing protein.
   
    0.927
RvY_07909-2
RNA helicase.
   
 
 0.923
RvY_18878-1
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
   
    0.916
RvY_16866-1
Nucleolar protein 6.
   
 
 0.914
RvY_14347-1
Uncharacterized protein.
   
 
 0.907
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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