STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_13481-1BHLH domain-containing protein. (457 aa)    
Predicted Functional Partners:
RvY_17794-1
BHLH domain-containing protein.
    
 
 0.968
RvY_01614-1
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.809
RvY_07472-1
Uncharacterized protein.
    
 0.784
RvY_08750
BHLH domain-containing protein.
    
 0.777
RvY_08750-1
BHLH domain-containing protein.
    
 0.777
RvY_05141-1
Uncharacterized protein.
   
 0.766
RvY_02387-1
SIRT7.
    
 0.731
RvY_12164-1
SIRT6.
    
 0.731
RvY_04775-1
JmjC domain-containing protein.
   
 0.717
RvY_15816-1
E2F_TDP domain-containing protein.
    
 0.707
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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