RvY_15199 protein (Ramazzottius varieornatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RvY_15199

Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (570 aa)

Predicted Functional Partners:

RvY_11131-1

0.660

RvY_17105-1

0.660

RvY_09540-1

0.652

RvY_17393-1

0.650

RvY_01455

0.635

RvY_01455-3

0.635

RvY_01455-1

0.635

RvY_01979-1

0.635

RvY_17805-1

0.635

RvY_16035-1

0.628

Your Current Organism:

Ramazzottius varieornatus

NCBI taxonomy Id: 947166
Other names: R. varieornatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RvY_01455	RvY_15199	A0A1D1UGD4	A0A1D1VU28	Uncharacterized protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.635
RvY_01455-1	RvY_15199	A0A1D1URM6	A0A1D1VU28	Uncharacterized protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.635
RvY_01455-3	RvY_15199	A0A1D1UJX3	A0A1D1VU28	Uncharacterized protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.635
RvY_01979-1	RvY_15199	A0A1D1UTC5	A0A1D1VU28	Uncharacterized protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.635
RvY_09540-1	RvY_15199	A0A1D1VC42	A0A1D1VU28	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.652
RvY_11131-1	RvY_15199	A0A1D1VMW8	A0A1D1VU28	Uncharacterized protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.660
RvY_15199	RvY_01455	A0A1D1VU28	A0A1D1UGD4	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.635
RvY_15199	RvY_01455-1	A0A1D1VU28	A0A1D1URM6	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.635
RvY_15199	RvY_01455-3	A0A1D1VU28	A0A1D1UJX3	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.635
RvY_15199	RvY_01979-1	A0A1D1VU28	A0A1D1UTC5	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.635
RvY_15199	RvY_09540-1	A0A1D1VU28	A0A1D1VC42	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.652
RvY_15199	RvY_11131-1	A0A1D1VU28	A0A1D1VMW8	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.660
RvY_15199	RvY_16035-1	A0A1D1VU28	A0A1D1VY31	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.628
RvY_15199	RvY_17105-1	A0A1D1VU28	A0A1D1W3B1	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.660
RvY_15199	RvY_17393-1	A0A1D1VU28	A0A1D1W7V5	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.650
RvY_15199	RvY_17805-1	A0A1D1VU28	A0A1D1W962	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.635
RvY_16035-1	RvY_15199	A0A1D1VY31	A0A1D1VU28	Uncharacterized protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.628
RvY_17105-1	RvY_15199	A0A1D1W3B1	A0A1D1VU28	Uncharacterized protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.660
RvY_17393-1	RvY_15199	A0A1D1W7V5	A0A1D1VU28	Uncharacterized protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.650
RvY_17805-1	RvY_15199	A0A1D1W962	A0A1D1VU28	Uncharacterized protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.635