STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_14677-1MIT domain-containing protein. (258 aa)    
Predicted Functional Partners:
RvY_06231-1
Uncharacterized protein.
    
 
 0.962
RvY_07984-1
Uncharacterized protein.
    
 
 0.868
RvY_14356-1
Uncharacterized protein.
    
 
 0.691
RvY_16668-1
Rab-GAP TBC domain-containing protein.
   
  
 0.566
RvY_11778-1
Uncharacterized protein.
      
 0.555
RvY_18335-1
Thioredoxin domain-containing protein.
   
  
 0.555
RvY_11024-1
Ubiquitin-like domain-containing protein.
      
 0.554
RvY_19290-1
Ribosomal_L30 domain-containing protein.
      
 0.552
RvY_12640-1
Era-type G domain-containing protein.
      
 0.546
RvY_06532-1
Uncharacterized protein.
    
 
 0.532
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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