STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_16567-1Uncharacterized protein. (436 aa)    
Predicted Functional Partners:
RvY_10633-1
PLD phosphodiesterase domain-containing protein.
      
 0.587
RvY_12310-1
KH domain-containing protein.
     
 0.579
RvY_00804-1
Uncharacterized protein.
      
 0.564
RvY_13764-1
Uncharacterized protein.
      
 0.554
RvY_10005-1
EAF domain-containing protein.
    
 
 0.520
RvY_08145-1
Tudor domain-containing protein.
    
 0.499
RvY_04076-1
Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.
   
 
 0.470
RvY_12855-1
Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.
   
 
 0.470
RvY_12778-1
Uncharacterized protein.
   
 
 0.470
RvY_06212-1
Uncharacterized protein.
      
 0.434
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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