STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_16273NodB homology domain-containing protein. (537 aa)    
Predicted Functional Partners:
RvY_17866-1
PID domain-containing protein.
   
 0.733
RvY_17126-1
Uncharacterized protein.
    
 0.673
RvY_14535-1
Uncharacterized protein.
   
 0.648
RvY_18472-1
Uncharacterized protein.
   
 0.648
RvY_17151-3
EGF-like domain-containing protein.
    
  0.604
RvY_08211-1
Protein kinase domain-containing protein.
    
 0.545
RvY_07472-1
Uncharacterized protein.
    
 0.544
RvY_08575-1
Uncharacterized protein.
     
 0.539
RvY_12184-1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.534
RvY_16633-1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.534
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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