STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_17417-1Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (420 aa)    
Predicted Functional Partners:
RvY_10165-1
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.981
RvY_14259-1
RING-type domain-containing protein.
   
 0.980
RvY_07906-1
Helicase ATP-binding domain-containing protein.
    
 0.978
RvY_13493-1
Uncharacterized protein.
    
 0.977
RvY_14501-1
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
   
 0.974
RvY_00630-1
HTH TFE/IIEalpha-type domain-containing protein.
    
 0.970
RvY_07611-1
General transcription factor IIH subunit.
   
 0.963
RvY_04833-1
Uncharacterized protein.
    
 0.960
RvY_09612-1
Uncharacterized protein.
    
 0.956
RvY_17806-1
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.932
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
Server load: low (26%) [HD]