STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_17339-1Uncharacterized protein. (480 aa)    
Predicted Functional Partners:
RvY_06213-1
Uncharacterized protein.
    
 0.906
RvY_08967-1
RPOLD domain-containing protein.
    
 0.906
RvY_10288-1
Uncharacterized protein.
    
 0.906
RvY_06962-1
Uncharacterized protein.
    
 0.905
RvY_17782-1
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.904
RvY_12820-1
RNA_pol_L_2 domain-containing protein.
    
 0.894
RvY_15295-1
Transcription elongation factor SPT5.
   
 0.885
RvY_08301-1
Spt4 domain-containing protein.
    
 0.869
RvY_16115-1
Uncharacterized protein.
    
 0.866
RvY_10085-2
RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.
    
 0.865
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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