STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_17448-1Tr-type G domain-containing protein. (1092 aa)    
Predicted Functional Partners:
RvY_09491-1
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.996
RvY_15763-1
Uncharacterized protein.
  
 
 0.988
RvY_07609-1
Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.
  
 0.896
RvY_10245-1
Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.
  
 0.896
RvY_17548-1
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
  
 0.896
RvY_16524-1
Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.
  
 0.896
RvY_17174-1
Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.
  
 0.896
RvY_09844-1
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
  
 0.895
RvY_15407-1
Ribosomal_L23eN domain-containing protein.
  
 0.894
RvY_17396-1
Uncharacterized protein.
  
 0.894
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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