STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_17325-1UBIQUITIN_CONJUGAT_2 domain-containing protein. (102 aa)    
Predicted Functional Partners:
RvY_18472-1
Uncharacterized protein.
    
 0.987
RvY_00201-1
Uncharacterized protein.
    
 0.937
RvY_14288-1
E3 ubiquitin protein ligase.
    
 0.922
RvY_08252-1
Uncharacterized protein.
    
 0.879
RvY_00564-1
Ubiquitin-like domain-containing protein.
    
 0.861
RvY_12784-1
UBA_e1_C domain-containing protein.
   
 0.849
RvY_18136-1
UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.
   
 0.849
RvY_04966-1
Ubiquitin-like domain-containing protein.
   
 0.788
RvY_08645-1
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
    
 
 0.783
RvY_12889-1
Uncharacterized protein.
    
 0.762
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
Server load: low (12%) [HD]