STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_18451-2Uncharacterized protein. (456 aa)    
Predicted Functional Partners:
RvY_02983-1
RRM domain-containing protein.
   
 0.931
RvY_17685-1
Uncharacterized protein.
   
 0.893
RvY_05079-1
Uncharacterized protein; Belongs to the DEAD box helicase family.
  
0.890
RvY_09312-1
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.866
RvY_12889-1
Uncharacterized protein.
   
 0.809
RvY_18446-1
Uncharacterized protein.
   
 0.807
RvY_05837-1
WD_REPEATS_REGION domain-containing protein.
    
 0.801
RvY_07193-1
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 0.797
RvY_06243-1
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 0.797
RvY_01591-1
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.792
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.