STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_19221-1Uncharacterized protein. (521 aa)    
Predicted Functional Partners:
RvY_08103-1
Uncharacterized protein.
  
 0.721
RvY_04964-1
Plug_translocon domain-containing protein.
   
  
 0.719
RvY_18460-1
Uncharacterized protein.
    
 
0.645
RvY_09809-1
Uncharacterized protein.
   
  
 0.617
RvY_18757-2
PPIase cyclophilin-type domain-containing protein.
      0.595
RvY_14130-1
Uncharacterized protein.
   
 
 0.593
RvY_14708-1
Uncharacterized protein.
   
 
 0.593
RvY_17556-1
Uncharacterized protein.
     
 0.584
RvY_17092-1
Uncharacterized protein.
    
 
 0.560
RvY_07609-1
Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.
      
 0.554
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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