STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_19464-1DDE_Tnp_1_7 domain-containing protein. (87 aa)    
Predicted Functional Partners:
RvY_12212-1
DDE_Tnp_1_7 domain-containing protein.
  
   0.633
RvY_11592-1
Phosphatidate cytidylyltransferase; Belongs to the CDS family.
     
 0.548
RvY_10217-1
PlsC domain-containing protein.
     
 0.547
RvY_14200-1
AP complex subunit beta.
    
  0.532
RvY_01828-1
DDE_Tnp_1_7 domain-containing protein.
  
     0.531
RvY_04037-1
DDE_Tnp_1_7 domain-containing protein.
  
     0.523
RvY_04188-1
DDE_Tnp_1_7 domain-containing protein.
  
     0.512
RvY_15537-1
Sphingomyelin phosphodiesterase; Converts sphingomyelin to ceramide.
    
 0.504
RvY_18445-1
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs; Belongs to the RtcB family.
    
 0.503
RvY_17477-1
DAGKc domain-containing protein.
     
 0.499
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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