RvY_19223-1 protein (Ramazzottius varieornatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RvY_19223-1

Uncharacterized protein. (467 aa)

Predicted Functional Partners:

RvY_00886-1

0.819

RvY_09403-1

0.819

RvY_06681-1

0.721

RvY_06676-1

0.721

RvY_13872

0.721

RvY_13872-1

0.721

RvY_07154-1

0.554

RvY_16529-1

0.554

Your Current Organism:

Ramazzottius varieornatus

NCBI taxonomy Id: 947166
Other names: R. varieornatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RvY_00886-1	RvY_06676-1	A0A1D1ULJ1	A0A1D1V4V0	Uncharacterized protein.	Uncharacterized protein.	0.718
RvY_00886-1	RvY_06681-1	A0A1D1ULJ1	A0A1D1UZE3	Uncharacterized protein.	Uncharacterized protein.	0.718
RvY_00886-1	RvY_13872	A0A1D1ULJ1	A0A1D1VPD6	Uncharacterized protein.	Uncharacterized protein.	0.718
RvY_00886-1	RvY_13872-1	A0A1D1ULJ1	A0A1D1VR62	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.718
RvY_00886-1	RvY_16529-1	A0A1D1ULJ1	A0A1D1W1I7	Uncharacterized protein.	Uncharacterized protein.	0.835
RvY_00886-1	RvY_19223-1	A0A1D1ULJ1	A0A1D1WBQ9	Uncharacterized protein.	Uncharacterized protein.	0.819
RvY_06676-1	RvY_00886-1	A0A1D1V4V0	A0A1D1ULJ1	Uncharacterized protein.	Uncharacterized protein.	0.718
RvY_06676-1	RvY_09403-1	A0A1D1V4V0	A0A1D1VEQ8	Uncharacterized protein.	Uncharacterized protein.	0.718
RvY_06676-1	RvY_16529-1	A0A1D1V4V0	A0A1D1W1I7	Uncharacterized protein.	Uncharacterized protein.	0.572
RvY_06676-1	RvY_19223-1	A0A1D1V4V0	A0A1D1WBQ9	Uncharacterized protein.	Uncharacterized protein.	0.721
RvY_06681-1	RvY_00886-1	A0A1D1UZE3	A0A1D1ULJ1	Uncharacterized protein.	Uncharacterized protein.	0.718
RvY_06681-1	RvY_09403-1	A0A1D1UZE3	A0A1D1VEQ8	Uncharacterized protein.	Uncharacterized protein.	0.718
RvY_06681-1	RvY_16529-1	A0A1D1UZE3	A0A1D1W1I7	Uncharacterized protein.	Uncharacterized protein.	0.572
RvY_06681-1	RvY_19223-1	A0A1D1UZE3	A0A1D1WBQ9	Uncharacterized protein.	Uncharacterized protein.	0.721
RvY_07154-1	RvY_19223-1	A0A1D1V125	A0A1D1WBQ9	tRNA-binding domain-containing protein.	Uncharacterized protein.	0.554
RvY_09403-1	RvY_06676-1	A0A1D1VEQ8	A0A1D1V4V0	Uncharacterized protein.	Uncharacterized protein.	0.718
RvY_09403-1	RvY_06681-1	A0A1D1VEQ8	A0A1D1UZE3	Uncharacterized protein.	Uncharacterized protein.	0.718
RvY_09403-1	RvY_13872	A0A1D1VEQ8	A0A1D1VPD6	Uncharacterized protein.	Uncharacterized protein.	0.718
RvY_09403-1	RvY_13872-1	A0A1D1VEQ8	A0A1D1VR62	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.718
RvY_09403-1	RvY_16529-1	A0A1D1VEQ8	A0A1D1W1I7	Uncharacterized protein.	Uncharacterized protein.	0.835