STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000633455_01208Unannotated protein. (253 aa)    
Predicted Functional Partners:
GCA_000633455_00531
Unannotated protein.
    
 0.688
GCA_000633455_01243
Unannotated protein.
  
 0.584
GCA_000633455_00378
Unannotated protein.
   
 0.565
GCA_000633455_03082
Unannotated protein.
   
 0.565
GCA_000633455_05577
Unannotated protein.
   
 0.565
GCA_000633455_04725
Unannotated protein.
    
  0.487
GCA_000633455_01209
Unannotated protein.
   
  0.477
GCA_000633455_03484
Unannotated protein.
    
  0.438
GCA_000633455_03993
Unannotated protein.
    
   0.414
GCA_000633455_01946
Unannotated protein.
    
   0.412
Your Current Organism:
Pedobacter jeongneungensis
NCBI taxonomy Id: 947309
Other names: JCM 17626, KACC 15514, P. jeongneungensis, Pedobacter sp. BH45, Sphingobacterium sp. H1ai, strain BH45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.