STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000633455_01943Unannotated protein. (263 aa)    
Predicted Functional Partners:
GCA_000633455_01942
Unannotated protein.
     0.994
GCA_000633455_01940
Unannotated protein.
 
     0.827
GCA_000633455_01941
Unannotated protein.
 
  
  0.806
GCA_000633455_04697
Unannotated protein.
  
  
  0.621
GCA_000633455_01573
Unannotated protein.
  
  
  0.581
GCA_000633455_03416
Unannotated protein.
  
  
  0.580
GCA_000633455_04041
Unannotated protein.
  
     0.549
GCA_000633455_04246
Unannotated protein.
  
  
  0.547
GCA_000633455_02441
Unannotated protein.
  
  
  0.543
GCA_000633455_02901
Unannotated protein.
  
     0.540
Your Current Organism:
Pedobacter jeongneungensis
NCBI taxonomy Id: 947309
Other names: JCM 17626, KACC 15514, P. jeongneungensis, Pedobacter sp. BH45, Sphingobacterium sp. H1ai, strain BH45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.