STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SALL4Uncharacterized protein. (986 aa)    
Predicted Functional Partners:
NANOG
Homeobox domain-containing protein.
   
 0.915
POU5F1-2
Uncharacterized protein.
   
 0.901
POU5F1
POU-specific domain-containing protein.
   
 0.901
ARID4B
AT-rich interaction domain 4B.
    
 
 0.747
ESRRB
Estrogen related receptor beta.
    
 0.740
ENSCJAP00000060201
Homeobox domain-containing protein.
   
 0.727
ENSCJAP00000073101
Homeobox domain-containing protein.
   
 0.727
GASK1B
Golgi associated kinase 1B.
      
 0.709
LIN28A
Lin-28 homolog A.
   
 
 0.703
TET2
Tet methylcytosine dioxygenase 2.
      
 0.702
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.