STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SALL4Uncharacterized protein. (986 aa)    
Predicted Functional Partners:
POU5F1-2
Uncharacterized protein.
   
 0.943
POU5F1
POU-specific domain-containing protein.
   
 0.943
NANOG
Homeobox domain-containing protein.
   
 0.937
CRBN
Uncharacterized protein.
    
 
 0.850
GATAD2B
GATA zinc finger domain containing 2B.
    
 0.823
POU5F2
Homeobox domain-containing protein.
   
 0.801
SOX2
Transcription factor SOX-2.
   
 0.785
ENSCJAP00000060201
Homeobox domain-containing protein.
   
 0.781
ENSCJAP00000073101
Homeobox domain-containing protein.
   
 0.781
CHD4
Chromodomain-helicase-DNA-binding protein 4.
    
 0.776
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.