TAPBPL protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TAPBPL

TAP binding protein like. (468 aa)

Predicted Functional Partners:

Caja-B3

0.619

B2M

0.564

Caja-G

0.561

MR1

0.556

F6W2J0_CALJA

0.546

ENSCJAP00000073484

0.546

ENSCJAP00000074309

0.546

F7GQE4_CALJA

0.543

FCGRT

0.543

ENSCJAP00000067954

0.543

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B2M	Caja-B3	ENSCJAP00000048032	ENSCJAP00000068923	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.959
B2M	Caja-G	ENSCJAP00000048032	ENSCJAP00000071482	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.968
B2M	ENSCJAP00000067954	ENSCJAP00000048032	ENSCJAP00000067954	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	Ig-like domain-containing protein.	0.787
B2M	ENSCJAP00000073484	ENSCJAP00000048032	ENSCJAP00000073484	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.822
B2M	ENSCJAP00000074309	ENSCJAP00000048032	ENSCJAP00000074309	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.973
B2M	F6W2J0_CALJA	ENSCJAP00000048032	ENSCJAP00000037249	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.880
B2M	F7GQE4_CALJA	ENSCJAP00000048032	ENSCJAP00000006682	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.953
B2M	FCGRT	ENSCJAP00000048032	ENSCJAP00000056335	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	Fc fragment of IgG receptor and transporter.	0.984
B2M	MR1	ENSCJAP00000048032	ENSCJAP00000007996	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	Major histocompatibility complex, class I-related; Belongs to the MHC class I family.	0.852
B2M	TAPBPL	ENSCJAP00000048032	ENSCJAP00000001252	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	TAP binding protein like.	0.564
Caja-B3	B2M	ENSCJAP00000068923	ENSCJAP00000048032	Ig-like domain-containing protein; Belongs to the MHC class I family.	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).	0.959
Caja-B3	Caja-G	ENSCJAP00000068923	ENSCJAP00000071482	Ig-like domain-containing protein; Belongs to the MHC class I family.	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.660
Caja-B3	ENSCJAP00000067954	ENSCJAP00000068923	ENSCJAP00000067954	Ig-like domain-containing protein; Belongs to the MHC class I family.	Ig-like domain-containing protein.	0.549
Caja-B3	ENSCJAP00000073484	ENSCJAP00000068923	ENSCJAP00000073484	Ig-like domain-containing protein; Belongs to the MHC class I family.	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.634
Caja-B3	ENSCJAP00000074309	ENSCJAP00000068923	ENSCJAP00000074309	Ig-like domain-containing protein; Belongs to the MHC class I family.	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.749
Caja-B3	F6W2J0_CALJA	ENSCJAP00000068923	ENSCJAP00000037249	Ig-like domain-containing protein; Belongs to the MHC class I family.	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.670
Caja-B3	F7GQE4_CALJA	ENSCJAP00000068923	ENSCJAP00000006682	Ig-like domain-containing protein; Belongs to the MHC class I family.	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.655
Caja-B3	FCGRT	ENSCJAP00000068923	ENSCJAP00000056335	Ig-like domain-containing protein; Belongs to the MHC class I family.	Fc fragment of IgG receptor and transporter.	0.540
Caja-B3	MR1	ENSCJAP00000068923	ENSCJAP00000007996	Ig-like domain-containing protein; Belongs to the MHC class I family.	Major histocompatibility complex, class I-related; Belongs to the MHC class I family.	0.561
Caja-B3	TAPBPL	ENSCJAP00000068923	ENSCJAP00000001252	Ig-like domain-containing protein; Belongs to the MHC class I family.	TAP binding protein like.	0.619