STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIX3SIX homeobox 3. (331 aa)    
Predicted Functional Partners:
PAX6
Paired box 6.
   
 
 0.787
RIN1
Ras and Rab interactor 1.
      
 0.768
LHX1
LIM homeobox 1.
    
 
 0.748
SHH
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
      
 0.687
RAX
Uncharacterized protein.
   
 
 0.682
OTX2
Uncharacterized protein.
   
 
 0.681
LHX2
LIM/homeobox protein Lhx2.
   
 
 0.664
VAX2
Ventral anterior homeobox 2.
   
 
 0.664
VSX2
Visual system homeobox 2.
   
  
 0.653
NR2E3
Nuclear receptor subfamily 2 group E member 3.
   
  
 0.651
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.