STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABCG8ATP binding cassette subfamily G member 8. (673 aa)    
Predicted Functional Partners:
ABCG5
ATP binding cassette subfamily G member 5.
  
0.999
NPC1L1
NPC1 like intracellular cholesterol transporter 1.
   
 
 0.844
CYP7A1
Cholesterol 7-alpha-monooxygenase; Belongs to the cytochrome P450 family.
   
 
 0.774
NR1H4
Nuclear receptor subfamily 1 group H member 4.
   
 0.734
NOTCH3
Notch receptor 3.
    
   0.718
TSPAN3
Tetraspanin.
    
   0.698
ACP3
Uncharacterized protein; Belongs to the histidine acid phosphatase family.
   
  
 0.695
SREBF2
Sterol regulatory element binding transcription factor 2.
    
 
 0.678
XPR1
Xenotropic and polytropic retrovirus receptor 1.
    
 
 0.677
CD320
CD320 molecule.
    
 
 0.664
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.