STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS45Vacuolar protein sorting-associated protein 45; Belongs to the STXBP/unc-18/SEC1 family. (570 aa)    
Predicted Functional Partners:
ZFYVE20
Rabenosyn, RAB effector.
    
 0.999
STX16
Syntaxin 16; Belongs to the syntaxin family.
    
 
 0.986
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
   
 
 0.935
MTO1
Mitochondrial tRNA translation optimization 1.
 
      0.900
ERGIC3
Endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform a.
 
      0.900
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.889
STX10
Syntaxin 10; Belongs to the syntaxin family.
    
 
 0.875
STX6
Syntaxin 6; Belongs to the syntaxin family.
    
 
 0.875
COG8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
 0.854
VPS18
VPS18 core subunit of CORVET and HOPS complexes.
    
 0.838
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.