STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM9BFamily with sequence similarity 9 member B. (235 aa)    
Predicted Functional Partners:
BRCA2
BRCA2 DNA repair associated.
    
 0.910
SYCP3
Cor1 domain-containing protein.
     
0.903
OGFOD1
2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1.
   
 
 0.726
SPO11
SPO11 initiator of meiotic double stranded breaks.
      
 0.592
UBE2I
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.551
BOLL
Boule homolog, RNA binding protein.
    
 
 0.546
KLHL1
Kelch-like protein 1.
    
 0.535
NR6A1
Nuclear receptor subfamily 6 group A member 1.
    
 0.524
STRA8
Stimulated by retinoic acid 8.
      
 0.497
DAZL
Deleted in azoospermia-like; RNA-binding protein, which is essential for gametogenesis in both males and females. Plays a central role during spermatogenesis. Acts by binding to the 3'-UTR of mRNA, specifically recognizing GUU triplets, and thereby regulating the translation of key transcripts (By similarity).
    
 
 0.496
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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