STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABCA13ATP binding cassette subfamily A member 13. (5010 aa)    
Predicted Functional Partners:
APOA1
Apolipoprotein A1.
   
 0.660
OSBPL6
Oxysterol-binding protein; Belongs to the OSBP family.
      
 0.632
SLC35F1
Solute carrier family 35 member F1.
   
  
 0.576
ADAT2
Adenosine deaminase tRNA specific 2.
      
 0.565
CLDN17
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
   
  
 0.558
LDLRAP1
Low density lipoprotein receptor adapter protein 1.
      
 0.530
NR1H4
Nuclear receptor subfamily 1 group H member 4.
    
 0.527
KCNV1
Potassium voltage-gated channel modifier subfamily V member 1; Belongs to the potassium channel family.
      
 0.521
FREM3
FRAS1 related extracellular matrix 3.
      
 0.512
TRIM2
Tripartite motif-containing protein 2; E3 ubiquitin-protein ligase that mediates the ubiquitination of phosphorylated BCL2L11. Also mediates the UBE2D1-dependent ubiquitination of NEFL. Plays a neuroprotective function. May play a role in neuronal rapid ischemic tolerance.
    
 
 0.501
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.