CRPPA protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CRPPA

Isoprenoid synthase domain-containing protein isoform a. (451 aa)

Predicted Functional Partners:

FKTN

0.952

XPC

0.840

RXYLT1

0.784

SFI1

0.747

NUP133

0.740

BPTF

0.734

OPN1SW

0.730

OPN1LW

0.729

IRF9

0.727

POMT1

0.719

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BPTF	CRPPA	ENSCJAP00000046119	ENSCJAP00000001597	Bromodomain PHD finger transcription factor.	Isoprenoid synthase domain-containing protein isoform a.	0.734
BPTF	IRF9	ENSCJAP00000046119	ENSCJAP00000013109	Bromodomain PHD finger transcription factor.	Interferon regulatory factor 9.	0.646
BPTF	NUP133	ENSCJAP00000046119	ENSCJAP00000071723	Bromodomain PHD finger transcription factor.	Nuclear pore complex protein Nup133.	0.818
BPTF	OPN1LW	ENSCJAP00000046119	ENSCJAP00000070261	Bromodomain PHD finger transcription factor.	Opsin, longwave 563 nm; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.	0.710
BPTF	OPN1SW	ENSCJAP00000046119	ENSCJAP00000032955	Bromodomain PHD finger transcription factor.	Opsin 1, short wave sensitive.	0.710
CRPPA	BPTF	ENSCJAP00000001597	ENSCJAP00000046119	Isoprenoid synthase domain-containing protein isoform a.	Bromodomain PHD finger transcription factor.	0.734
CRPPA	FKTN	ENSCJAP00000001597	ENSCJAP00000048182	Isoprenoid synthase domain-containing protein isoform a.	Fukutin isoform a.	0.952
CRPPA	IRF9	ENSCJAP00000001597	ENSCJAP00000013109	Isoprenoid synthase domain-containing protein isoform a.	Interferon regulatory factor 9.	0.727
CRPPA	NUP133	ENSCJAP00000001597	ENSCJAP00000071723	Isoprenoid synthase domain-containing protein isoform a.	Nuclear pore complex protein Nup133.	0.740
CRPPA	OPN1LW	ENSCJAP00000001597	ENSCJAP00000070261	Isoprenoid synthase domain-containing protein isoform a.	Opsin, longwave 563 nm; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.	0.729
CRPPA	OPN1SW	ENSCJAP00000001597	ENSCJAP00000032955	Isoprenoid synthase domain-containing protein isoform a.	Opsin 1, short wave sensitive.	0.730
CRPPA	POMT1	ENSCJAP00000001597	ENSCJAP00000015474	Isoprenoid synthase domain-containing protein isoform a.	Protein O-mannosyltransferase 1.	0.719
CRPPA	RXYLT1	ENSCJAP00000001597	ENSCJAP00000059235	Isoprenoid synthase domain-containing protein isoform a.	Transmembrane protein 5.	0.784
CRPPA	SFI1	ENSCJAP00000001597	ENSCJAP00000043459	Isoprenoid synthase domain-containing protein isoform a.	Protein SFI1 homolog; Plays a role in the dynamic structure of centrosome- associated contractile fibers via its interaction with CETN2. Belongs to the SFI1 family.	0.747
CRPPA	XPC	ENSCJAP00000001597	ENSCJAP00000045013	Isoprenoid synthase domain-containing protein isoform a.	XPC complex subunit, DNA damage recognition and repair factor.	0.840
FKTN	CRPPA	ENSCJAP00000048182	ENSCJAP00000001597	Fukutin isoform a.	Isoprenoid synthase domain-containing protein isoform a.	0.952
FKTN	POMT1	ENSCJAP00000048182	ENSCJAP00000015474	Fukutin isoform a.	Protein O-mannosyltransferase 1.	0.920
FKTN	RXYLT1	ENSCJAP00000048182	ENSCJAP00000059235	Fukutin isoform a.	Transmembrane protein 5.	0.747
IRF9	BPTF	ENSCJAP00000013109	ENSCJAP00000046119	Interferon regulatory factor 9.	Bromodomain PHD finger transcription factor.	0.646
IRF9	CRPPA	ENSCJAP00000013109	ENSCJAP00000001597	Interferon regulatory factor 9.	Isoprenoid synthase domain-containing protein isoform a.	0.727