STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALKBH5Putative alpha-ketoglutarate-dependent dioxygenase ABH5. (394 aa)    
Predicted Functional Partners:
FTO
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.929
YTHDF1
YTH N6-methyladenosine RNA binding protein 1.
      
 0.877
METTL14
Methyltransferase-like protein 14; Belongs to the MT-A70-like family.
   
  
 0.863
YTHDC2
YTH domain containing 2.
     
 0.843
ZC3H13
Zinc finger CCCH-type containing 13.
      
 0.806
WTAP
Pre-mRNA-splicing regulator WTAP isoform 1.
   
  
 0.777
VIRMA
Protein virilizer homolog isoform 1.
      
 0.711
YTHDC1
YTH domain containing 1.
      
 0.697
YTHDF3
YTH domain-containing protein.
      
 0.679
RBM15
RNA binding motif protein 15.
      
 0.676
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.