POLD4 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

POLD4

DNA polymerase delta subunit 4 isoform 1. (107 aa)

Predicted Functional Partners:

POLD2

0.966

POLD1

0.962

POLE4

0.926

POLE

0.919

POLE2

0.916

POLE3

0.912

POLD3

0.900

POLA1

0.664

RPA3

0.634

POLA2

0.634

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
POLA1	POLA2	ENSCJAP00000070998	ENSCJAP00000004215	DNA polymerase.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.999
POLA1	POLD1	ENSCJAP00000070998	ENSCJAP00000008236	DNA polymerase.	DNA polymerase.	0.988
POLA1	POLD2	ENSCJAP00000070998	ENSCJAP00000014797	DNA polymerase.	DNA polymerase delta 2, accessory subunit.	0.954
POLA1	POLD3	ENSCJAP00000070998	ENSCJAP00000049992	DNA polymerase.	DNA polymerase delta subunit 3.	0.955
POLA1	POLD4	ENSCJAP00000070998	ENSCJAP00000001807	DNA polymerase.	DNA polymerase delta subunit 4 isoform 1.	0.664
POLA1	POLE	ENSCJAP00000070998	ENSCJAP00000023756	DNA polymerase.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.998
POLA1	POLE2	ENSCJAP00000070998	ENSCJAP00000032208	DNA polymerase.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.992
POLA1	POLE3	ENSCJAP00000070998	ENSCJAP00000064912	DNA polymerase.	DNA polymerase epsilon 3, accessory subunit.	0.952
POLA1	POLE4	ENSCJAP00000070998	ENSCJAP00000031528	DNA polymerase.	DNA polymerase epsilon 4, accessory subunit.	0.969
POLA1	RPA3	ENSCJAP00000070998	ENSCJAP00000001211	DNA polymerase.	Replication protein A 14 kDa subunit.	0.929
POLA2	POLA1	ENSCJAP00000004215	ENSCJAP00000070998	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	DNA polymerase.	0.999
POLA2	POLD1	ENSCJAP00000004215	ENSCJAP00000008236	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	DNA polymerase.	0.962
POLA2	POLD2	ENSCJAP00000004215	ENSCJAP00000014797	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	DNA polymerase delta 2, accessory subunit.	0.967
POLA2	POLD3	ENSCJAP00000004215	ENSCJAP00000049992	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	DNA polymerase delta subunit 3.	0.803
POLA2	POLD4	ENSCJAP00000004215	ENSCJAP00000001807	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	DNA polymerase delta subunit 4 isoform 1.	0.634
POLA2	POLE	ENSCJAP00000004215	ENSCJAP00000023756	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.972
POLA2	POLE2	ENSCJAP00000004215	ENSCJAP00000032208	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.967
POLA2	POLE3	ENSCJAP00000004215	ENSCJAP00000064912	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	DNA polymerase epsilon 3, accessory subunit.	0.927
POLA2	POLE4	ENSCJAP00000004215	ENSCJAP00000031528	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	DNA polymerase epsilon 4, accessory subunit.	0.897
POLA2	RPA3	ENSCJAP00000004215	ENSCJAP00000001211	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	Replication protein A 14 kDa subunit.	0.851