COMTD1 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

COMTD1

Catechol O-methyltransferase domain-containing protein 1. (262 aa)

Predicted Functional Partners:

NDUFA7

0.594

DUS2

0.583

PTRH2

0.564

LYRM7

0.564

TMEM11

0.564

SLC25A29

0.564

MRPL42

0.562

THEM5

0.561

TK1

0.546

PNKD

0.541

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COMTD1	DUS2	ENSCJAP00000001956	ENSCJAP00000029178	Catechol O-methyltransferase domain-containing protein 1.	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform 1.	0.583
COMTD1	LYRM7	ENSCJAP00000001956	ENSCJAP00000066021	Catechol O-methyltransferase domain-containing protein 1.	LYR motif containing 7; Belongs to the complex I LYR family.	0.564
COMTD1	MRPL42	ENSCJAP00000001956	ENSCJAP00000005379	Catechol O-methyltransferase domain-containing protein 1.	Uncharacterized protein.	0.562
COMTD1	NDUFA7	ENSCJAP00000001956	ENSCJAP00000019746	Catechol O-methyltransferase domain-containing protein 1.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7.	0.594
COMTD1	PNKD	ENSCJAP00000001956	ENSCJAP00000076455	Catechol O-methyltransferase domain-containing protein 1.	PNKD metallo-beta-lactamase domain containing.	0.541
COMTD1	PTRH2	ENSCJAP00000001956	ENSCJAP00000002679	Catechol O-methyltransferase domain-containing protein 1.	Peptidyl-tRNA hydrolase 2.	0.564
COMTD1	SLC25A29	ENSCJAP00000001956	ENSCJAP00000074572	Catechol O-methyltransferase domain-containing protein 1.	Mitochondrial carnitine/acylcarnitine carrier protein CACL; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.564
COMTD1	THEM5	ENSCJAP00000001956	ENSCJAP00000053913	Catechol O-methyltransferase domain-containing protein 1.	Thioesterase superfamily member 5.	0.561
COMTD1	TK1	ENSCJAP00000001956	ENSCJAP00000036187	Catechol O-methyltransferase domain-containing protein 1.	Thymidine kinase.	0.546
COMTD1	TMEM11	ENSCJAP00000001956	ENSCJAP00000066729	Catechol O-methyltransferase domain-containing protein 1.	Transmembrane protein 11, mitochondrial.	0.564
DUS2	COMTD1	ENSCJAP00000029178	ENSCJAP00000001956	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform 1.	Catechol O-methyltransferase domain-containing protein 1.	0.583
LYRM7	COMTD1	ENSCJAP00000066021	ENSCJAP00000001956	LYR motif containing 7; Belongs to the complex I LYR family.	Catechol O-methyltransferase domain-containing protein 1.	0.564
LYRM7	MRPL42	ENSCJAP00000066021	ENSCJAP00000005379	LYR motif containing 7; Belongs to the complex I LYR family.	Uncharacterized protein.	0.577
LYRM7	NDUFA7	ENSCJAP00000066021	ENSCJAP00000019746	LYR motif containing 7; Belongs to the complex I LYR family.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7.	0.582
LYRM7	PNKD	ENSCJAP00000066021	ENSCJAP00000076455	LYR motif containing 7; Belongs to the complex I LYR family.	PNKD metallo-beta-lactamase domain containing.	0.541
LYRM7	PTRH2	ENSCJAP00000066021	ENSCJAP00000002679	LYR motif containing 7; Belongs to the complex I LYR family.	Peptidyl-tRNA hydrolase 2.	0.564
LYRM7	SLC25A29	ENSCJAP00000066021	ENSCJAP00000074572	LYR motif containing 7; Belongs to the complex I LYR family.	Mitochondrial carnitine/acylcarnitine carrier protein CACL; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.564
LYRM7	THEM5	ENSCJAP00000066021	ENSCJAP00000053913	LYR motif containing 7; Belongs to the complex I LYR family.	Thioesterase superfamily member 5.	0.573
LYRM7	TMEM11	ENSCJAP00000066021	ENSCJAP00000066729	LYR motif containing 7; Belongs to the complex I LYR family.	Transmembrane protein 11, mitochondrial.	0.564
MRPL42	COMTD1	ENSCJAP00000005379	ENSCJAP00000001956	Uncharacterized protein.	Catechol O-methyltransferase domain-containing protein 1.	0.562