STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLRN1Clarin 1. (260 aa)    
Predicted Functional Partners:
USH1G
USH1 protein network component sans.
      
 0.850
CIB2
Calcium and integrin-binding family member 2 isoform 1.
      
 0.821
USH1C
USH1 protein network component harmonin.
      
 0.812
WHRN
Whirlin.
      
 0.811
USH2A
Usherin.
      
 0.780
MYO7A
Myosin VIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
      
 0.780
CDH23
Cadherin related 23.
      
 0.698
PCDH15
Protocadherin related 15.
      
 0.620
PDZD7
PDZ domain containing 7.
      
 0.615
EYS
Eyes shut homolog.
      
 0.504
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.