Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CLRN1Clarin 1. (260 aa)    
Predicted Functional Partners:
USH1G
USH1 protein network component sans.
      
 0.868
USH1C
USH1 protein network component harmonin.
      
 0.827
CIB2
Calcium and integrin-binding family member 2 isoform 1.
      
 0.827
WHRN
Whirlin.
      
 0.826
USH2A
Usherin.
      
 0.819
LHFPL5
LHFPL tetraspan subfamily member 5.
      
 0.780
MYO7A
Myosin VIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
      
 0.780
CDH23
Cadherin related 23.
      
 0.700
PCDH15
Protocadherin related 15.
      
 0.699
PDZD7
PDZ domain containing 7.
      
 0.629
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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