STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YIF1AYip1 interacting factor homolog A, membrane trafficking protein. (293 aa)    
Predicted Functional Partners:
YIPF5
Protein YIPF.
   
 
 0.839
RABAC1
PRA1 family protein.
   
 
 0.733
YIPF7
Protein YIPF.
   
 
 0.715
SELENOS
Uncharacterized protein.
   
 
 0.697
YIPF4
Protein YIPF.
   
 
 0.694
IER3IP1
Immediate early response 3-interacting protein 1.
    
 
 0.508
ENSCJAP00000061718
Uncharacterized protein.
   
 
 0.474
ENSCJAP00000065080
CTLH domain-containing protein.
   
 
 0.474
MAEA
LisH domain-containing protein.
   
 
 0.474
STX5
Syntaxin-5 isoform 1; Belongs to the syntaxin family.
      
 0.468
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.