Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
SMYD4SET and MYND domain-containing protein 4. (798 aa)    
Predicted Functional Partners:
CDIP1
Cell death inducing p53 target 1.
   
 0.783
ROGDI
Rogdi atypical leucine zipper.
      
 0.645
COPS7A
COP9 signalosome complex subunit 7a.
      
 0.633
SMYD5
SET and MYND domain-containing protein 5.
      
 0.632
RTN4RL1
Reticulon 4 receptor like 1.
   
 
 0.609
LANCL1
LanC-like protein 1.
      
 0.597
SMYD3
SET and MYND domain-containing protein 3 isoform 1.
   
  
 0.586
DHRS3
Short-chain dehydrogenase/reductase 3; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 
 0.580
FAM120A
Constitutive coactivator of PPAR-gamma-like protein 1.
      
 0.531
KDM6B
Lysine-specific demethylase 6B.
   
 0.519
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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