STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDE6BPhosphodiesterase. (531 aa)    
Predicted Functional Partners:
PDE6G
Phosphodiesterase 6G.
   
 0.958
GNAT1
G protein subunit alpha transducin 1.
   
 0.871
RCVRN
Recoverin.
   
  
 0.797
PRPH2
Peripherin 2.
   
  
 0.793
RHO
Rhodopsin.
   
  
 0.777
SLC24A1
Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.
   
  
 0.769
PDE6A
Phosphodiesterase.
  
  
0.763
GNAT2
G protein subunit alpha transducin 2.
   
 0.743
CNGA1
Cyclic nucleotide gated channel subunit alpha 1.
   
 0.701
GUCY2D
Guanylate cyclase.
   
 0.697
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.