STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SH3D19SH3 domain containing 19. (1046 aa)    
Predicted Functional Partners:
CLINT1
Clathrin interactor 1 isoform 1.
     
 0.701
SH3YL1
SH3 and SYLF domain containing 1.
   
  
0.665
VTA1
Vacuolar protein sorting-associated protein VTA1 homolog.
    
   0.616
GCH1
GTP cyclohydrolase 1 isoform 1.
    
   0.616
WWTR1
WW domain-containing protein.
   
 
 0.604
SMARCA1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1.
      
 0.583
PUM1
Pumilio RNA binding family member 1.
     
 0.579
PUM2
Pumilio homolog 2.
     
 0.571
PSMB4
Proteasome subunit beta; Belongs to the peptidase T1B family.
      
 0.569
IKZF2
IKAROS family zinc finger 2.
      
 0.564
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.