STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VRK2Serine/threonine-protein kinase VRK2 isoform 1. (510 aa)    
Predicted Functional Partners:
LTV1
LTV1 ribosome biogenesis factor.
    
 0.823
BYSL
Bystin like.
    
 0.747
RIOK2
RIO kinase 2.
    
 0.745
ANKLE2
Ankyrin repeat and LEM domain-containing protein 2.
   
 0.716
ENSCJAP00000075603
Uncharacterized protein.
   
 0.716
TSR1
TSR1 ribosome maturation factor.
    
 0.658
NOB1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
    
 0.629
FAM83H
Family with sequence similarity 83 member H.
    
 
 0.624
RPS3
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
    
 0.587
RHOD
Rho-related GTP-binding protein RhoD.
   
 0.576
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.