STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF38BUncharacterized protein. (546 aa)    
Predicted Functional Partners:
PRPF38A
Pre-mRNA processing factor 38A.
   
 
 
0.905
UCHL5
Ubiquitin carboxyl-terminal hydrolase.
 
      0.847
LUC7L3
LUC7 like 3 pre-mRNA splicing factor.
   
 
 0.833
RBM25
RNA binding motif protein 25.
   
  
 0.791
PNN
Pinin.
   
    0.783
SRSF11
Serine and arginine rich splicing factor 11.
   
 
 0.774
RBM39
RNA binding motif protein 39.
   
  
 0.723
SREK1
Uncharacterized protein.
   
 
 0.680
UBAP2
Ubiquitin-associated protein 2.
   
  
 0.649
ZC3H18
Zinc finger CCCH-type containing 18.
   
   0.648
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.