STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMD7Sterile alpha motif domain containing 7. (446 aa)    
Predicted Functional Partners:
OPN1SW
Opsin 1, short wave sensitive.
     
 0.817
PCBP4
Poly(rC) binding protein 4.
      
 0.774
OTOS
Otospiralin.
   
  
 0.766
GPR160
Putative G-protein coupled receptor 160.
      
 0.729
SEC62
SEC62 homolog, preprotein translocation factor.
 
    
 0.661
PRKCI
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
   
 
 0.652
ATP1A1
Sodium/potassium-transporting ATPase subunit alpha.
      
 0.641
HNRNPDL
Heterogeneous nuclear ribonucleoprotein D-like isoform a.
      
 0.569
MYL4
Myosin light chain 4.
      
 0.566
ASF1B
Anti-silencing function 1B histone chaperone.
      
 0.566
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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