STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAMP2Lysosome-associated membrane glycoprotein 2 isoform C. (411 aa)    
Predicted Functional Partners:
LAMP1
Lysosomal associated membrane protein 1.
  
 
0.978
CD63
Tetraspanin.
    
 0.921
EEA1
Uncharacterized protein.
      
 0.802
CTSD
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
   
 
 0.721
BECN1
Beclin-1.
      
 0.716
CTSB
Cathepsin B; Belongs to the peptidase C1 family.
   
 
 0.631
ATG5
Autophagy protein 5; Involved in autophagic vesicle formation.
      
 0.614
SQSTM1
Sequestosome-1 isoform 1.
    
 
 0.605
SNCA
Uncharacterized protein.
   
 
 0.594
SEC13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 
 0.584
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.