RNF215 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RNF215

Ring finger protein 215. (376 aa)

Predicted Functional Partners:

RSPO1

0.615

LGR5

0.532

LGR4

0.532

UBE2K

0.518

UBOX5

0.512

RSPO3

0.505

TRIP12

0.503

ENSCJAP00000055029

0.487

BAG6

0.487

RSPO2

0.460

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAG6	RNF215	ENSCJAP00000074601	ENSCJAP00000004827	Ubiquitin-like domain-containing protein.	Ring finger protein 215.	0.487
ENSCJAP00000055029	RNF215	ENSCJAP00000055029	ENSCJAP00000004827	Ubiquitin-like domain-containing protein.	Ring finger protein 215.	0.487
LGR4	LGR5	ENSCJAP00000011465	ENSCJAP00000002599	Leucine-rich repeat-containing G-protein coupled receptor 4.	Leucine-rich repeat-containing G-protein coupled receptor 5.	0.970
LGR4	RNF215	ENSCJAP00000011465	ENSCJAP00000004827	Leucine-rich repeat-containing G-protein coupled receptor 4.	Ring finger protein 215.	0.532
LGR4	RSPO1	ENSCJAP00000011465	ENSCJAP00000071493	Leucine-rich repeat-containing G-protein coupled receptor 4.	R-spondin 1.	0.999
LGR4	RSPO2	ENSCJAP00000011465	ENSCJAP00000012029	Leucine-rich repeat-containing G-protein coupled receptor 4.	R-spondin-2.	0.984
LGR4	RSPO3	ENSCJAP00000011465	ENSCJAP00000077480	Leucine-rich repeat-containing G-protein coupled receptor 4.	R-spondin-3.	0.983
LGR5	LGR4	ENSCJAP00000002599	ENSCJAP00000011465	Leucine-rich repeat-containing G-protein coupled receptor 5.	Leucine-rich repeat-containing G-protein coupled receptor 4.	0.970
LGR5	RNF215	ENSCJAP00000002599	ENSCJAP00000004827	Leucine-rich repeat-containing G-protein coupled receptor 5.	Ring finger protein 215.	0.532
LGR5	RSPO1	ENSCJAP00000002599	ENSCJAP00000071493	Leucine-rich repeat-containing G-protein coupled receptor 5.	R-spondin 1.	0.996
LGR5	RSPO2	ENSCJAP00000002599	ENSCJAP00000012029	Leucine-rich repeat-containing G-protein coupled receptor 5.	R-spondin-2.	0.993
LGR5	RSPO3	ENSCJAP00000002599	ENSCJAP00000077480	Leucine-rich repeat-containing G-protein coupled receptor 5.	R-spondin-3.	0.981
RNF215	BAG6	ENSCJAP00000004827	ENSCJAP00000074601	Ring finger protein 215.	Ubiquitin-like domain-containing protein.	0.487
RNF215	ENSCJAP00000055029	ENSCJAP00000004827	ENSCJAP00000055029	Ring finger protein 215.	Ubiquitin-like domain-containing protein.	0.487
RNF215	LGR4	ENSCJAP00000004827	ENSCJAP00000011465	Ring finger protein 215.	Leucine-rich repeat-containing G-protein coupled receptor 4.	0.532
RNF215	LGR5	ENSCJAP00000004827	ENSCJAP00000002599	Ring finger protein 215.	Leucine-rich repeat-containing G-protein coupled receptor 5.	0.532
RNF215	RSPO1	ENSCJAP00000004827	ENSCJAP00000071493	Ring finger protein 215.	R-spondin 1.	0.615
RNF215	RSPO2	ENSCJAP00000004827	ENSCJAP00000012029	Ring finger protein 215.	R-spondin-2.	0.460
RNF215	RSPO3	ENSCJAP00000004827	ENSCJAP00000077480	Ring finger protein 215.	R-spondin-3.	0.505
RNF215	TRIP12	ENSCJAP00000004827	ENSCJAP00000024288	Ring finger protein 215.	Uncharacterized protein.	0.503