STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP38Ubiquitin carboxyl-terminal hydrolase 38; Belongs to the peptidase C19 family. (1041 aa)    
Predicted Functional Partners:
WDR48
WD repeat domain 48.
   
 0.880
WDR20
WD_REPEATS_REGION domain-containing protein.
   
 0.773
DMWD
DM1 locus, WD repeat containing.
   
 0.773
NKAPD1
NKAP domain containing 1.
      
 0.770
ZCCHC2
Zinc finger CCHC-type containing 2.
    
 
 0.712
FANCD2
FA complementation group D2.
    
 0.693
UBC
Uncharacterized protein.
    
 0.644
ENSCJAP00000059313
Uncharacterized protein.
    
 0.644
SMC6
Structural maintenance of chromosomes 6.
   
  
 0.639
SPCS3
Signal peptidase complex subunit 3.
      
 0.620
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.