STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF170E3 ubiquitin-protein ligase RNF170 isoform a. (258 aa)    
Predicted Functional Partners:
UBE2J1
Ubiquitin-conjugating enzyme E2 J1.
    
 
 0.769
CGRRF1
Cell growth regulator with RING finger domain protein 1.
      
 0.745
FAM8A1
Protein FAM8A1.
      
 0.738
ERLIN2
ER lipid raft associated 2.
    
 
 0.734
RNF130
E3 ubiquitin-protein ligase RNF130.
      
 0.734
RNF126
RING finger protein 126.
      
 0.731
UBE2G2
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
      
 0.727
RNFT1
Ring finger protein, transmembrane 1.
      
 0.719
RNF145
Ring finger protein 145.
      
 0.708
AGPAT5
1-acylglycerol-3-phosphate O-acyltransferase 5.
   
  
 0.700
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.