STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SF3B1Splicing factor 3B subunit 1 isoform 1. (1304 aa)    
Predicted Functional Partners:
SF3B2
Splicing factor 3B subunit 2.
   
 0.999
PHF5A
PHD finger-like domain-containing protein 5A.
   
 0.999
SF3B6
Pre-mRNA branch site protein p14.
   
 0.999
DDX42
ATP-dependent RNA helicase DDX42.
   
 0.999
SF3B3
Splicing factor 3B subunit 3.
   
 0.999
SF3B5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
    
 0.999
SF3B4
Splicing factor 3B subunit 4.
    
 0.999
SF3A2
Splicing factor 3A subunit 2.
    
 0.995
SF3A3
Splicing factor 3A subunit 3.
   
 0.994
DDX46
DEAD-box helicase 46.
   
 0.994
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.