ASB18 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ASB18

Ankyrin repeat and SOCS box containing 18. (466 aa)

Predicted Functional Partners:

LTBP2

0.804

KCNA7

0.643

ASB12

0.555

ASB1

0.514

DMRT2

0.465

HTR3A

0.465

PTHLH

0.465

H9KY61_CALJA

0.448

ENSCJAP00000079093

0.434

IFT81

0.429

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASB1	ASB12	ENSCJAP00000067572	ENSCJAP00000032923	Ankyrin repeat and SOCS box containing 1.	Ankyrin repeat and SOCS box containing 12.	0.460
ASB1	ASB18	ENSCJAP00000067572	ENSCJAP00000008034	Ankyrin repeat and SOCS box containing 1.	Ankyrin repeat and SOCS box containing 18.	0.514
ASB1	H9KY61_CALJA	ENSCJAP00000067572	ENSCJAP00000046173	Ankyrin repeat and SOCS box containing 1.	ANK_REP_REGION domain-containing protein.	0.555
ASB1	IFT81	ENSCJAP00000067572	ENSCJAP00000017487	Ankyrin repeat and SOCS box containing 1.	Intraflagellar transport protein 81 homolog isoform 1.	0.429
ASB12	ASB1	ENSCJAP00000032923	ENSCJAP00000067572	Ankyrin repeat and SOCS box containing 12.	Ankyrin repeat and SOCS box containing 1.	0.460
ASB12	ASB18	ENSCJAP00000032923	ENSCJAP00000008034	Ankyrin repeat and SOCS box containing 12.	Ankyrin repeat and SOCS box containing 18.	0.555
ASB12	ENSCJAP00000079093	ENSCJAP00000032923	ENSCJAP00000079093	Ankyrin repeat and SOCS box containing 12.	ANK_REP_REGION domain-containing protein.	0.488
ASB12	H9KY61_CALJA	ENSCJAP00000032923	ENSCJAP00000046173	Ankyrin repeat and SOCS box containing 12.	ANK_REP_REGION domain-containing protein.	0.519
ASB12	IFT81	ENSCJAP00000032923	ENSCJAP00000017487	Ankyrin repeat and SOCS box containing 12.	Intraflagellar transport protein 81 homolog isoform 1.	0.429
ASB18	ASB1	ENSCJAP00000008034	ENSCJAP00000067572	Ankyrin repeat and SOCS box containing 18.	Ankyrin repeat and SOCS box containing 1.	0.514
ASB18	ASB12	ENSCJAP00000008034	ENSCJAP00000032923	Ankyrin repeat and SOCS box containing 18.	Ankyrin repeat and SOCS box containing 12.	0.555
ASB18	DMRT2	ENSCJAP00000008034	ENSCJAP00000019694	Ankyrin repeat and SOCS box containing 18.	Doublesex and mab-3 related transcription factor 2.	0.465
ASB18	ENSCJAP00000079093	ENSCJAP00000008034	ENSCJAP00000079093	Ankyrin repeat and SOCS box containing 18.	ANK_REP_REGION domain-containing protein.	0.434
ASB18	H9KY61_CALJA	ENSCJAP00000008034	ENSCJAP00000046173	Ankyrin repeat and SOCS box containing 18.	ANK_REP_REGION domain-containing protein.	0.448
ASB18	HTR3A	ENSCJAP00000008034	ENSCJAP00000022083	Ankyrin repeat and SOCS box containing 18.	5-hydroxytryptamine receptor 3A; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.465
ASB18	IFT81	ENSCJAP00000008034	ENSCJAP00000017487	Ankyrin repeat and SOCS box containing 18.	Intraflagellar transport protein 81 homolog isoform 1.	0.429
ASB18	KCNA7	ENSCJAP00000008034	ENSCJAP00000000350	Ankyrin repeat and SOCS box containing 18.	Potassium voltage-gated channel subfamily A member 7; Belongs to the potassium channel family.	0.643
ASB18	LTBP2	ENSCJAP00000008034	ENSCJAP00000038076	Ankyrin repeat and SOCS box containing 18.	Latent transforming growth factor beta binding protein 2.	0.804
ASB18	PTHLH	ENSCJAP00000008034	ENSCJAP00000055266	Ankyrin repeat and SOCS box containing 18.	Parathyroid hormone like hormone.	0.465
DMRT2	ASB18	ENSCJAP00000019694	ENSCJAP00000008034	Doublesex and mab-3 related transcription factor 2.	Ankyrin repeat and SOCS box containing 18.	0.465