STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL10A1Collagen type X alpha 1 chain. (680 aa)    
Predicted Functional Partners:
COL6A2
Uncharacterized protein.
 
 
 0.804
KCNQ4
Potassium voltage-gated channel subfamily Q member 4; Belongs to the potassium channel family.
    
 
 0.789
USH2A
Usherin.
   
 0.765
WFS1
Wolframin ER transmembrane glycoprotein.
     
 0.760
CDH23
Cadherin related 23.
   
 0.756
CLIC5
Chloride intracellular channel protein; Belongs to the chloride channel CLIC family.
   
  
 0.752
OTOF
Otoferlin.
    
 
 0.748
PCDH15
Protocadherin related 15.
   
 0.747
ATP8A2
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
    
 0.741
STOX1
Storkhead box 1.
      
 0.725
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.