LDLRAD1 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LDLRAD1

Low density lipoprotein receptor class A domain containing 1. (205 aa)

Predicted Functional Partners:

ENSCJAP00000067149

0.876

ENSCJAP00000069046

0.876

DNAJC6

0.742

DNAJC10

0.732

SNTN

0.701

F6YVC7_CALJA

0.666

BAG3

0.666

CLPB

0.646

GRPEL1

0.646

GRPEL2

0.646

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAG3	DNAJC6	ENSCJAP00000042157	ENSCJAP00000074313	BAG domain-containing protein.	Putative tyrosine-protein phosphatase auxilin isoform 1.	0.631
BAG3	ENSCJAP00000067149	ENSCJAP00000042157	ENSCJAP00000067149	BAG domain-containing protein.	Uncharacterized protein.	0.828
BAG3	ENSCJAP00000069046	ENSCJAP00000042157	ENSCJAP00000069046	BAG domain-containing protein.	J domain-containing protein.	0.828
BAG3	F6YVC7_CALJA	ENSCJAP00000042157	ENSCJAP00000037872	BAG domain-containing protein.	Uncharacterized protein.	0.923
BAG3	LDLRAD1	ENSCJAP00000042157	ENSCJAP00000008956	BAG domain-containing protein.	Low density lipoprotein receptor class A domain containing 1.	0.666
CLPB	DNAJC10	ENSCJAP00000049562	ENSCJAP00000020935	ClpB homolog, mitochondrial AAA ATPase chaperonin.	DnaJ homolog subfamily C member 10; Endoplasmic reticulum disulfide reductase involved both in the correct folding of proteins and degradation of misfolded proteins.	0.670
CLPB	GRPEL1	ENSCJAP00000049562	ENSCJAP00000053317	ClpB homolog, mitochondrial AAA ATPase chaperonin.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.860
CLPB	GRPEL2	ENSCJAP00000049562	ENSCJAP00000058404	ClpB homolog, mitochondrial AAA ATPase chaperonin.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.841
CLPB	LDLRAD1	ENSCJAP00000049562	ENSCJAP00000008956	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Low density lipoprotein receptor class A domain containing 1.	0.646
DNAJC10	CLPB	ENSCJAP00000020935	ENSCJAP00000049562	DnaJ homolog subfamily C member 10; Endoplasmic reticulum disulfide reductase involved both in the correct folding of proteins and degradation of misfolded proteins.	ClpB homolog, mitochondrial AAA ATPase chaperonin.	0.670
DNAJC10	DNAJC6	ENSCJAP00000020935	ENSCJAP00000074313	DnaJ homolog subfamily C member 10; Endoplasmic reticulum disulfide reductase involved both in the correct folding of proteins and degradation of misfolded proteins.	Putative tyrosine-protein phosphatase auxilin isoform 1.	0.791
DNAJC10	ENSCJAP00000067149	ENSCJAP00000020935	ENSCJAP00000067149	DnaJ homolog subfamily C member 10; Endoplasmic reticulum disulfide reductase involved both in the correct folding of proteins and degradation of misfolded proteins.	Uncharacterized protein.	0.773
DNAJC10	ENSCJAP00000069046	ENSCJAP00000020935	ENSCJAP00000069046	DnaJ homolog subfamily C member 10; Endoplasmic reticulum disulfide reductase involved both in the correct folding of proteins and degradation of misfolded proteins.	J domain-containing protein.	0.773
DNAJC10	GRPEL1	ENSCJAP00000020935	ENSCJAP00000053317	DnaJ homolog subfamily C member 10; Endoplasmic reticulum disulfide reductase involved both in the correct folding of proteins and degradation of misfolded proteins.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.753
DNAJC10	GRPEL2	ENSCJAP00000020935	ENSCJAP00000058404	DnaJ homolog subfamily C member 10; Endoplasmic reticulum disulfide reductase involved both in the correct folding of proteins and degradation of misfolded proteins.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.753
DNAJC10	LDLRAD1	ENSCJAP00000020935	ENSCJAP00000008956	DnaJ homolog subfamily C member 10; Endoplasmic reticulum disulfide reductase involved both in the correct folding of proteins and degradation of misfolded proteins.	Low density lipoprotein receptor class A domain containing 1.	0.732
DNAJC6	BAG3	ENSCJAP00000074313	ENSCJAP00000042157	Putative tyrosine-protein phosphatase auxilin isoform 1.	BAG domain-containing protein.	0.631
DNAJC6	DNAJC10	ENSCJAP00000074313	ENSCJAP00000020935	Putative tyrosine-protein phosphatase auxilin isoform 1.	DnaJ homolog subfamily C member 10; Endoplasmic reticulum disulfide reductase involved both in the correct folding of proteins and degradation of misfolded proteins.	0.791
DNAJC6	ENSCJAP00000067149	ENSCJAP00000074313	ENSCJAP00000067149	Putative tyrosine-protein phosphatase auxilin isoform 1.	Uncharacterized protein.	0.962
DNAJC6	ENSCJAP00000069046	ENSCJAP00000074313	ENSCJAP00000069046	Putative tyrosine-protein phosphatase auxilin isoform 1.	J domain-containing protein.	0.962