F7I5M7_CALJA protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX5	F7I5M7_CALJA	ENSCJAP00000035916	ENSCJAP00000008959	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.782
DDX5	HNRNPA2B1	ENSCJAP00000035916	ENSCJAP00000014695	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1.	0.946
DDX5	HNRNPD	ENSCJAP00000035916	ENSCJAP00000028000	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Heterogeneous nuclear ribonucleoprotein D0 isoform a.	0.679
DDX5	HNRNPF	ENSCJAP00000035916	ENSCJAP00000015301	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Heterogeneous nuclear ribonucleoprotein F.	0.880
DDX5	HNRNPK	ENSCJAP00000035916	ENSCJAP00000046691	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Heterogeneous nuclear ribonucleoprotein K isoform a.	0.958
DDX5	HNRNPL	ENSCJAP00000035916	ENSCJAP00000042166	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.753
DDX5	HNRNPM	ENSCJAP00000035916	ENSCJAP00000020089	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Heterogeneous nuclear ribonucleoprotein M.	0.908
DDX5	HNRNPU	ENSCJAP00000035916	ENSCJAP00000031301	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Heterogeneous nuclear ribonucleoprotein U isoform a.	0.908
DDX5	HNRNPUL1	ENSCJAP00000035916	ENSCJAP00000044628	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform a.	0.665
DDX5	NCBP2	ENSCJAP00000035916	ENSCJAP00000063240	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.730
F7I5M7_CALJA	DDX5	ENSCJAP00000008959	ENSCJAP00000035916	Uncharacterized protein.	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	0.782
F7I5M7_CALJA	HNRNPA2B1	ENSCJAP00000008959	ENSCJAP00000014695	Uncharacterized protein.	Heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1.	0.860
F7I5M7_CALJA	HNRNPD	ENSCJAP00000008959	ENSCJAP00000028000	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein D0 isoform a.	0.721
F7I5M7_CALJA	HNRNPF	ENSCJAP00000008959	ENSCJAP00000015301	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein F.	0.808
F7I5M7_CALJA	HNRNPK	ENSCJAP00000008959	ENSCJAP00000046691	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein K isoform a.	0.738
F7I5M7_CALJA	HNRNPL	ENSCJAP00000008959	ENSCJAP00000042166	Uncharacterized protein.	Uncharacterized protein.	0.696
F7I5M7_CALJA	HNRNPM	ENSCJAP00000008959	ENSCJAP00000020089	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein M.	0.722
F7I5M7_CALJA	HNRNPU	ENSCJAP00000008959	ENSCJAP00000031301	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein U isoform a.	0.721
F7I5M7_CALJA	HNRNPUL1	ENSCJAP00000008959	ENSCJAP00000044628	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform a.	0.713
F7I5M7_CALJA	NCBP2	ENSCJAP00000008959	ENSCJAP00000063240	Uncharacterized protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.719